1. Guo W, Zhu A, Fan W, Mower JP. Complete mitochondrial genomes from the ferns Ophioglossum californicum and Psilotum nudum are highly repetitive with the largest organellar introns. New Phytologist. 2017; 213 (1): 391-403

2. Zhu A, Guo W, Gupta S, Mower JP. Evolutionary dynamics of the plastid inverted repeat: the effects of expansion, contraction, and loss on substitution rates. New Phytologist. 2016; 209(4): 1747-1756

3. Grewe F, Zhu A, Mower JP. Loss of a trans-splicing nad1 intron from Geraniaceae and transfer of the maturase gene matR to the nucleus in Pelargonium. Genome Biology and Evolution. 2016; 8(10): 3193-3201

4. Park S, Grewe F, Zhu A, Ruhlman TA, Sabir J, Mower JP, Jansen RK. Dynamic evolution of Geranium mitochondrial genomes through multiple horizontal and intracellular gene transfers. New Phytologist. 2015; 208(2): 570-583

5. Zhu A, Guo W, Jain K, Mower JP. Unprecedented heterogeneity in the synonymous substitution rate within a plant genome. Molecular Biology and Evolution. 2014; 31 (5): 1228-1236

6. Ding Y, Chang J, Ma Q, Liu S, Jin S, Han J, Xu R, Zhu A, Guo J, Luo Y, Xu J, Xu Q, Zeng Y, Deng X, Cheng Y. Network analysis of postharvest senescence process in Citrus fruits revealed by transcriptomic and metabolomic profiling. Plant Physiology. 2015; 168(1):357-376

7. Xu Q, Chen L, Ruan X, Chen D, Zhu A, Chen C, Bertrand D., Jiao W., …, Deng X, Ruan Y. The draft genome of sweet orange (Citrus sinensis). Nature Genetics. 2013; 45 (1):59-66

8. Sun X, Zhu A, Liu S, Sheng L, Ma Q, Zhang L, Nishawy EME., Zeng Y, Xu J, Ma Z, Cheng Y, Deng X. Integration of metabolomics and subcellular organelle expression microarray increases understanding of the organic acid changes in post-harvest Citrus fruit. Journal of Intergrative Plant Biology. 2013; 55(11):1038-1053

9. Zhu A, Li W, Ye J, Sun X, Ding Y, Cheng Y, Deng X. Microarray expression profiling of postharvest Ponkan mandarin (Citrus reticulata) fruit under cold storage reveals regulatory gene candidates and implications on sugars metabolism. Journal of Integrative Plant Biology. 2011; 53 (5):358-374

10. Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X. Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type. BMC Genomics. 2010; 11(1):246

11. Liu Q, Zhu A, Chai L, Zhou W, Yu K, Ding J, Xu J, Deng X. Transcriptome analysis of a spontaneous mutant in sweet orange [Citrus sinensis (L.) Osbeck] during fruit development. Journal of Experimental Botany. 2009;60 (3):801-813